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CryoEM Structure of Foot and Mouth Disease Virus O1 Manisa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5AC9
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.111 f_angle_d 0.971 f_chiral_restr 0.059 f_bond_d 0.008 f_plane_restr 0.008
Sample Foot-and-mouth disease virus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 13483 Reported Resolution (Å) 3.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5AC9) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Cross-correlation coefficient Overall B Value 120 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 18
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) 1000 Maximum Defocus (nm) 4000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN 910 MULTI-SPECIMEN SINGLE TILT CRYO TRANSFER HOLDER Nominal Magnification 160000 Calibrated Magnification 37037 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 6 CTF CORRECTION CTFFIND 4.0.17 MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT RELION 1.3 FINAL EULER ASSIGNMENT RELION 1.3 CLASSIFICATION RELION 1.3 RECONSTRUCTION RELION 1.3 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 13483