☰ Navigation Tabs
Bacteroides ovatus mixed linkage glucan PUL (MLGUL) GH16 in complex with G4G4G3G Product
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NBO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 100 mM MES pH 6
200 mM LiCl2
15-25 % w/v PEG-6000
Crystal Properties Matthews coefficient Solvent content 2.3 46.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 167.342 α = 90 b = 60.149 β = 93.75 c = 49.673 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.57 99 0.066 0.994 10.8 3.9 45347 0.094
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99 0.735 0.499 0.516 1.7 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5NBO 1.8 49.57 45346 2384 98.93 0.1769 0.175 0.1838 0.2129 0.2205 RANDOM 22.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 0.78 -0.78 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.842 r_dihedral_angle_3_deg 13.455 r_dihedral_angle_4_deg 11.071 r_dihedral_angle_1_deg 7.207 r_angle_other_deg 3.813 r_mcangle_it 2.046 r_angle_refined_deg 1.636 r_mcbond_it 1.384 r_mcbond_other 1.379 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.842 r_dihedral_angle_3_deg 13.455 r_dihedral_angle_4_deg 11.071 r_dihedral_angle_1_deg 7.207 r_angle_other_deg 3.813 r_mcangle_it 2.046 r_angle_refined_deg 1.636 r_mcbond_it 1.384 r_mcbond_other 1.379 r_chiral_restr 0.102 r_bond_refined_d 0.013 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3749 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling