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Bacteroides ovatus mixed linkage glucan PUL (MLGUL) GH16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CRQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 100 mM MES pH 6
200 mM LiCl2
15-25% Peg-6000
Crystal Properties Matthews coefficient Solvent content 2.04 39.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 167.466 α = 90 b = 60.801 β = 94.49 c = 49.385 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.23 98.9 0.067 0.053 0.996 10 3 45483
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.9 0.446 0.365 0.669 2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4crq 1.8 49.23 43072 2392 98.78 0.16351 0.1613 0.1722 0.20414 0.2117 RANDOM 18.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.97 -0.51 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.716 r_dihedral_angle_3_deg 12.617 r_dihedral_angle_4_deg 10.787 r_dihedral_angle_1_deg 7.267 r_long_range_B_refined 5.226 r_long_range_B_other 5.225 r_scangle_other 4.171 r_scbond_it 2.675 r_scbond_other 2.675 r_mcangle_other 2.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.716 r_dihedral_angle_3_deg 12.617 r_dihedral_angle_4_deg 10.787 r_dihedral_angle_1_deg 7.267 r_long_range_B_refined 5.226 r_long_range_B_other 5.225 r_scangle_other 4.171 r_scbond_it 2.675 r_scbond_other 2.675 r_mcangle_other 2.203 r_mcangle_it 2.194 r_angle_refined_deg 1.83 r_mcbond_it 1.565 r_mcbond_other 1.547 r_angle_other_deg 0.993 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3766 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing