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Complement factor D in complex with the inhibitor (2S,4R)-4-Fluoro-pyrrolidine-1,2-dicarboxylic acid 1-[(1-carbamoyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide]
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 23% PEG 3350, 0.1 M HEPES pH 7.5, 50 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.09 41.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.437 α = 90 b = 49.727 β = 106.82 c = 39.026 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 1999-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54719
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 53.1 92 12.7 3.06 15609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.95 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 53.07 14826 781 92.27 0.17685 0.17273 0.1813 0.25999 0.262 RANDOM 16.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.05 -0.07 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.561 r_dihedral_angle_4_deg 19.456 r_dihedral_angle_3_deg 14.898 r_dihedral_angle_1_deg 6.479 r_long_range_B_refined 3.858 r_long_range_B_other 3.857 r_scangle_other 2.713 r_mcangle_it 2.074 r_mcangle_other 2.073 r_angle_refined_deg 1.775
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.561 r_dihedral_angle_4_deg 19.456 r_dihedral_angle_3_deg 14.898 r_dihedral_angle_1_deg 6.479 r_long_range_B_refined 3.858 r_long_range_B_other 3.857 r_scangle_other 2.713 r_mcangle_it 2.074 r_mcangle_other 2.073 r_angle_refined_deg 1.775 r_scbond_it 1.72 r_scbond_other 1.719 r_mcbond_it 1.407 r_mcbond_other 1.397 r_angle_other_deg 1.056 r_chiral_restr 0.423 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1638 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing