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NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 600 2 2D 1H-13C HSQC 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 600 3 3D 1H-15N TOCSY 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 4 3D 1H-15N NOESY 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 5 3D 1H-13C NOESY 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 600 6 3D HNCO 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 7 3D HNCACB 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 8 3D HNCA 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 9 3D CBCA(CO)NH 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 10 3D HN(CO)CA 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 600 11 3D HN(CA)CO 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 850 12 3D HCC(CO)NH 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 600 13 3D HCCH-COSY 4 mM [U-13C; U-15N] T.thermophila BUBL1-ubl5, 20 mM sodium phosphate 90% H2O/10% D2O 0.06 M 6 ambient atm 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 850 2 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 data analysis CcpNmr Analysis CCPN 4 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 5 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman