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Targeting the PEX14-PEX5 interaction by small molecules provides novel therapeutic routes to treat trypanosomiases.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 290 0.2M Sodium Sulfate
0.1M Bis Tris Propane pH 7.5
20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.5 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.76 α = 90 b = 116.06 β = 101.86 c = 38.82 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.976 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.549 37.99 98.2 0.029 1 17.7 3.3 44009
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.549 1.576 97.7 0.458 0.902 2.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.55 20 41737 2255 98.09 0.19609 0.19492 0.2091 0.21748 0.2318 RANDOM 28.055
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -1.45 1.99 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.529 r_dihedral_angle_4_deg 13.539 r_dihedral_angle_3_deg 11.872 r_sphericity_free 10.369 r_dihedral_angle_1_deg 4.341 r_sphericity_bonded 2.594 r_long_range_B_refined 1.515 r_long_range_B_other 1.373 r_scbond_it 1.367 r_scbond_other 1.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.529 r_dihedral_angle_4_deg 13.539 r_dihedral_angle_3_deg 11.872 r_sphericity_free 10.369 r_dihedral_angle_1_deg 4.341 r_sphericity_bonded 2.594 r_long_range_B_refined 1.515 r_long_range_B_other 1.373 r_scbond_it 1.367 r_scbond_other 1.367 r_angle_refined_deg 1.239 r_scangle_other 1.17 r_mcbond_it 0.924 r_mcbond_other 0.922 r_angle_other_deg 0.92 r_mcangle_it 0.912 r_mcangle_other 0.912 r_rigid_bond_restr 0.684 r_chiral_restr 0.065 r_bond_refined_d 0.01 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1984 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 204
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing