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CRYSTAL STRUCTURE OF STREPTAVIDIN D-amino acid containing peptide Gdlwqheatwkkq
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 293 0.1M Sodium citrate pH 4.5,
20% PEG4000
Crystal Properties Matthews coefficient Solvent content 1.87 34.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.779 α = 90 b = 57.779 β = 90 c = 84.405 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.700001 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 47.72 100 0.057 0.99 14.94 12.48 18228
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.71 100 0.95 0.341 0.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.61 47.72 18228 946 99.95 0.20587 0.20397 0.24341 0.2427 RANDOM 43.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 -1.84 3.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.022 r_dihedral_angle_4_deg 13.595 r_dihedral_angle_3_deg 10.182 r_dihedral_angle_1_deg 7.051 r_long_range_B_refined 4.879 r_long_range_B_other 4.877 r_scangle_other 1.723 r_mcangle_it 1.692 r_mcangle_other 1.692 r_angle_refined_deg 1.526
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.022 r_dihedral_angle_4_deg 13.595 r_dihedral_angle_3_deg 10.182 r_dihedral_angle_1_deg 7.051 r_long_range_B_refined 4.879 r_long_range_B_other 4.877 r_scangle_other 1.723 r_mcangle_it 1.692 r_mcangle_other 1.692 r_angle_refined_deg 1.526 r_scbond_it 1.088 r_scbond_other 1.085 r_mcbond_it 1.072 r_mcbond_other 1.069 r_angle_other_deg 0.908 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 896 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 85
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing