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CRYSTAL STRUCTURE OF STREPTAVIDIN WITH PEPTIDE D-amino acid containing peptide GyGlanvdessG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M Sodium citrate pH 5.6
20% PEG4000
20% Isopropanol
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.665 α = 90 b = 84.878 β = 99.1 c = 57.754 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.700002 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 57.09 99.6 0.036 0.999 11.4 3.43 195681
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.14 99.7 0.64 0.388 1.11 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.05 57.09 195681 10211 99.86 0.16982 0.16861 0.19308 0.1922 RANDOM 16.321
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -0.26 0.04 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.597 r_sphericity_free 23.05 r_dihedral_angle_4_deg 13.681 r_dihedral_angle_3_deg 11.002 r_dihedral_angle_1_deg 6.955 r_sphericity_bonded 5.148 r_long_range_B_refined 2.287 r_long_range_B_other 2.287 r_angle_refined_deg 1.451 r_rigid_bond_restr 1.236
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.597 r_sphericity_free 23.05 r_dihedral_angle_4_deg 13.681 r_dihedral_angle_3_deg 11.002 r_dihedral_angle_1_deg 6.955 r_sphericity_bonded 5.148 r_long_range_B_refined 2.287 r_long_range_B_other 2.287 r_angle_refined_deg 1.451 r_rigid_bond_restr 1.236 r_scangle_other 1.092 r_mcangle_it 1.029 r_mcangle_other 1.029 r_scbond_it 0.931 r_scbond_other 0.931 r_angle_other_deg 0.89 r_mcbond_it 0.801 r_mcbond_other 0.799 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3767 Nucleic Acid Atoms Solvent Atoms 689 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing