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Structure of the distal domain of mouse adenovirus 2 fibre, methylmercury chloride derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 4.0 M ammonium formate, 0.1 M HEPES-NaOH, 3 mM methylmercury chloride, 10 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.82 56.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.116 α = 90 b = 164.285 β = 90 c = 96.432 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 1.0024 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.76 96.4 99.7 0.104 0.998 19.6 11.7 19199 71.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.76 3.02 98.8 0.589 0.867 3.2 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.76 82.14 18197 985 99.64 0.20507 0.20272 0.24824 0.2314 RANDOM 60.004
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 2.41 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.948 r_dihedral_angle_3_deg 18.093 r_dihedral_angle_4_deg 18.04 r_long_range_B_refined 9.519 r_long_range_B_other 9.519 r_dihedral_angle_1_deg 7.26 r_mcangle_it 6.191 r_mcangle_other 6.19 r_scangle_other 5.541 r_mcbond_other 3.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.948 r_dihedral_angle_3_deg 18.093 r_dihedral_angle_4_deg 18.04 r_long_range_B_refined 9.519 r_long_range_B_other 9.519 r_dihedral_angle_1_deg 7.26 r_mcangle_it 6.191 r_mcangle_other 6.19 r_scangle_other 5.541 r_mcbond_other 3.634 r_mcbond_it 3.633 r_scbond_it 3.284 r_scbond_other 3.283 r_angle_refined_deg 1.46 r_angle_other_deg 0.931 r_chiral_restr 0.097 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4529 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling autoSHARP phasing Coot model building