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Microtubule end binding protein complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GJO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 100 mM PCTP buffer, pH 4, supplemented with 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.06 40.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.35 α = 90 b = 183.272 β = 112.33 c = 42.387 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 45.82 99 0.051 0.056 0.02 2.8 6.8 52463
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.43 97.3 0.504 0.501 0.208 0.81 2.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3GJO 2.3 45.82 25149 1324 99.49 0.23237 0.23039 0.2336 0.27059 0.2448 RANDOM 58.427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -0.21 -2.25 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.052 r_dihedral_angle_4_deg 18.697 r_dihedral_angle_3_deg 15.531 r_dihedral_angle_1_deg 4.399 r_long_range_B_refined 3.053 r_long_range_B_other 2.983 r_angle_refined_deg 1.165 r_mcangle_it 1.128 r_mcangle_other 1.127 r_angle_other_deg 0.924
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.052 r_dihedral_angle_4_deg 18.697 r_dihedral_angle_3_deg 15.531 r_dihedral_angle_1_deg 4.399 r_long_range_B_refined 3.053 r_long_range_B_other 2.983 r_angle_refined_deg 1.165 r_mcangle_it 1.128 r_mcangle_other 1.127 r_angle_other_deg 0.924 r_scangle_other 0.896 r_mcbond_it 0.629 r_mcbond_other 0.629 r_scbond_it 0.497 r_scbond_other 0.497 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4333 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing