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Gadolinium phased PBP2 (SSO6202) at 2.2 Ang
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294.15 Protein: 42.7 mg/ml in 20 mM Hepes pH 7.5, 0.3 M NaCl, 1mM MgCl2 and 1mM b-ME.
Crystallization buffer: 0.2 M NaNO3, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.15 α = 90 b = 62.15 β = 90 c = 35.68 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-11-22 M MAD 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-11-22 M MAD 3 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-11-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.71076 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 1.71145 ESRF ID29 3 SYNCHROTRON ESRF BEAMLINE ID29 1.70371 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 31.1 99 0.06 31.6 17 3963 30.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 90.7 0.07 1.3 8.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2.24 31.08 3740 171 93.62 0.2294 0.2271 0.2316 0.2748 0.2667 RANDOM 37.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.6342 -1.6342 3.2683
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.55 t_omega_torsion 2.42 t_angle_deg 1.29 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.55 t_omega_torsion 2.42 t_angle_deg 1.29 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 468 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 24
Software Software Software Name Purpose BUSTER refinement XDS data reduction SCALA data scaling SHARP phasing