☰ Navigation Tabs
An improved model of the Trypanosoma brucei CTP synthase glutaminase domain:acivicin complex.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM BROMIDE, 30 %
PEG MONOMETHYL ETHER 2000
Crystal Properties Matthews coefficient Solvent content 2.7 38.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.48 α = 90 b = 63.68 β = 90 c = 76.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.98004 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 100 0.08 13.9 7.84 14866
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 20 14087 740 99.1 0.19346 0.19121 0.1974 0.23528 0.2461 RANDOM 18.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 1.02 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.742 r_dihedral_angle_4_deg 15.604 r_dihedral_angle_3_deg 12.965 r_dihedral_angle_1_deg 5.52 r_long_range_B_refined 3.876 r_long_range_B_other 3.792 r_scangle_other 2.079 r_mcangle_it 1.976 r_mcangle_other 1.975 r_angle_refined_deg 1.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.742 r_dihedral_angle_4_deg 15.604 r_dihedral_angle_3_deg 12.965 r_dihedral_angle_1_deg 5.52 r_long_range_B_refined 3.876 r_long_range_B_other 3.792 r_scangle_other 2.079 r_mcangle_it 1.976 r_mcangle_other 1.975 r_angle_refined_deg 1.232 r_scbond_it 1.225 r_scbond_other 1.224 r_mcbond_it 1.147 r_mcbond_other 1.146 r_angle_other_deg 0.912 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2091 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement