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Crystal structure of Seleno-OphA-DeltaC18 in complex with SAM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 0.2 M NaCl, 0.1 M Bis-Tris pH 6.0 and 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.64 53.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.567 α = 90 b = 100.891 β = 90 c = 123.275 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9281 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.437 78.08 100 0.07 0.999 18.6 11.4 169405
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.437 1.441 95.9 1.142 0.751 11.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.44 78.08 160828 8475 99.99 0.17142 0.17075 0.1707 0.18401 0.1836 RANDOM 25.913
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 0.93 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.037 r_dihedral_angle_4_deg 15.947 r_dihedral_angle_3_deg 11.826 r_dihedral_angle_1_deg 5.415 r_long_range_B_refined 4.406 r_long_range_B_other 4.137 r_angle_refined_deg 1.37 r_mcangle_it 1.16 r_mcangle_other 1.16 r_scangle_other 1.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.037 r_dihedral_angle_4_deg 15.947 r_dihedral_angle_3_deg 11.826 r_dihedral_angle_1_deg 5.415 r_long_range_B_refined 4.406 r_long_range_B_other 4.137 r_angle_refined_deg 1.37 r_mcangle_it 1.16 r_mcangle_other 1.16 r_scangle_other 1.141 r_angle_other_deg 0.927 r_scbond_it 0.714 r_scbond_other 0.714 r_mcbond_it 0.643 r_mcbond_other 0.643 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5815 Nucleic Acid Atoms Solvent Atoms 809 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling CRANK2 phasing