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Adhesin Complex Protein from Neisseria meningitidis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 300 25 mM Hepes/Na pH 7.5, 37 mM NaCl) with 200 nl precipitant solution containing 0.2 M lithium sulfate, 0.1 M sodium acetate pH 4.5 and 50 % w/v PEG 400
Crystal Properties Matthews coefficient Solvent content 1.91 35.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.47 α = 90 b = 58.47 β = 90 c = 51.561 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9282 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50.64 99.9 0.054 0.036 13.5 5.9 20461
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 100 0.997 0.668 1.8 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.4 50.64 19413 1023 99.84 0.16191 0.15979 0.20045 0.2381 RANDOM 27.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.08 -0.17 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.477 r_sphericity_free 18.872 r_dihedral_angle_4_deg 17.218 r_dihedral_angle_3_deg 12.328 r_sphericity_bonded 11.846 r_dihedral_angle_1_deg 6.109 r_long_range_B_refined 4.023 r_long_range_B_other 4.02 r_scangle_other 3.909 r_scbond_it 3.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.477 r_sphericity_free 18.872 r_dihedral_angle_4_deg 17.218 r_dihedral_angle_3_deg 12.328 r_sphericity_bonded 11.846 r_dihedral_angle_1_deg 6.109 r_long_range_B_refined 4.023 r_long_range_B_other 4.02 r_scangle_other 3.909 r_scbond_it 3.357 r_scbond_other 3.356 r_rigid_bond_restr 2.855 r_mcangle_other 2.74 r_mcangle_it 2.726 r_mcbond_it 2.14 r_mcbond_other 2.062 r_angle_refined_deg 1.776 r_angle_other_deg 1.003 r_chiral_restr 0.104 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 714 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing