☰ Navigation Tabs
X-ray structure of the F14'A -N15'A double mutant of GLIC in complex with propofol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HFB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 400mM NaSCN
100mM NaAcetate pH4
12-15% PEG4K
16% glycerol
2% DMSO
Crystal Properties Matthews coefficient Solvent content 5.21 76.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.76 α = 90 b = 132.51 β = 102.72 c = 160.52 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER X 9M 2016-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.97 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 20 98 7.6 3.6 66139 103.81
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HFB 3.1 20 66108 3345 98.37 0.1958 0.1952 0.2122 0.2077 0.223 RANDOM 81.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.7868 22.6867 -7.2449 13.0317
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.25 t_omega_torsion 2.93 t_angle_deg 1.11 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.25 t_omega_torsion 2.93 t_angle_deg 1.11 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12653 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 549
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling REFMAC phasing