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X-ray structure of the F14'A mutant of GLIC in complex with propofol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HFB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100 mM Na acetate pH4
12-15% PEG4K
200 mM NaSCN
16% glycerol
2% DMSO
Crystal Properties Matthews coefficient Solvent content 5.15 76.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.281 α = 90 b = 132.972 β = 102.1 c = 158.976 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M-F 2011-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 49 99 16.6 3.5 66286 94.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HFB 3.1 20 65133 3286 97.73 0.1944 0.1939 0.205 0.2042 0.2141 RANDOM 101.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.9207 26.7136 -5.2597 16.1804
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.48 t_omega_torsion 2.18 t_angle_deg 0.92 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.48 t_omega_torsion 2.18 t_angle_deg 0.92 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12610 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 247
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling REFMAC phasing