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Glycoside Hydrolase BT3686 bound to Glucuronic Acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG3350 and 200 mM Potassium Acetate
Crystal Properties Matthews coefficient Solvent content 2.22 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.178 α = 90 b = 120.178 β = 90 c = 52.651 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1.01 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 21.75 99.6 13.5 5 436522
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.39 21.75 82358 4366 99.56 0.17397 0.17293 0.1829 0.19423 0.2017 RANDOM 19.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.09 -0.18 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.311 r_dihedral_angle_4_deg 19.259 r_dihedral_angle_3_deg 11.606 r_dihedral_angle_1_deg 6.855 r_long_range_B_other 4.684 r_long_range_B_refined 4.683 r_scangle_other 2.907 r_mcangle_it 2.641 r_mcangle_other 2.641 r_scbond_it 1.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.311 r_dihedral_angle_4_deg 19.259 r_dihedral_angle_3_deg 11.606 r_dihedral_angle_1_deg 6.855 r_long_range_B_other 4.684 r_long_range_B_refined 4.683 r_scangle_other 2.907 r_mcangle_it 2.641 r_mcangle_other 2.641 r_scbond_it 1.877 r_scbond_other 1.876 r_mcbond_it 1.6 r_mcbond_other 1.6 r_angle_refined_deg 1.508 r_angle_other_deg 0.953 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3012 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing