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HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG
Crystal Properties Matthews coefficient Solvent content 2.81 56.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.888 α = 97.57 b = 118.348 β = 94.31 c = 186.747 γ = 98.75
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M Si (111) monochromator followed by a toroidal focusing mirror 2015-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 1.0000 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 184.24 90.6 0.068 7.58 1.9 158847
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.25 90.4 0.677 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 184.24 158401 445 90.6 0.21131 0.21107 0.2131 0.3 0.3042 RANDOM 114.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.07 2.12 -0.66 4.15 -1.03 -1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.875 r_dihedral_angle_3_deg 17.413 r_long_range_B_refined 15.103 r_long_range_B_other 15.103 r_dihedral_angle_4_deg 14.2 r_scangle_other 11.385 r_mcangle_it 8.175 r_mcangle_other 8.175 r_scbond_it 7.798 r_scbond_other 7.798
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.875 r_dihedral_angle_3_deg 17.413 r_long_range_B_refined 15.103 r_long_range_B_other 15.103 r_dihedral_angle_4_deg 14.2 r_scangle_other 11.385 r_mcangle_it 8.175 r_mcangle_other 8.175 r_scbond_it 7.798 r_scbond_other 7.798 r_dihedral_angle_1_deg 7.644 r_mcbond_it 5.175 r_mcbond_other 5.175 r_angle_other_deg 2.413 r_angle_refined_deg 1.448 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 54511 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1794
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement