X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5MU0 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529320% (w/v) PEG3350, 0.1 M Bistris-Propane pH 7.5, 0.2 M sodium acetate
Crystal Properties
Matthews coefficientSolvent content
2.3647.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.861α = 90
b = 156.008β = 90
c = 156.592γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPILATUS 62014-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.749.091000.12112.16.210049846.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.751000.7992.36.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5MU02.749.0995561486499.930.207370.206290.22845RANDOM57.939
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.570.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.399
r_dihedral_angle_4_deg18.315
r_dihedral_angle_3_deg14.918
r_dihedral_angle_1_deg6.743
r_long_range_B_refined2.705
r_long_range_B_other2.705
r_angle_refined_deg1.484
r_mcangle_it1.482
r_mcangle_other1.481
r_scangle_other1.354
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.399
r_dihedral_angle_4_deg18.315
r_dihedral_angle_3_deg14.918
r_dihedral_angle_1_deg6.743
r_long_range_B_refined2.705
r_long_range_B_other2.705
r_angle_refined_deg1.484
r_mcangle_it1.482
r_mcangle_other1.481
r_scangle_other1.354
r_angle_other_deg1.005
r_mcbond_it0.832
r_mcbond_other0.832
r_scbond_it0.78
r_scbond_other0.78
r_chiral_restr0.111
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms27006
Nucleic Acid Atoms
Solvent Atoms441
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing