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Archaeal branched-chain amino acid aminotransferase from Archaeoglobus fulgidus; holoform
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EIY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 291 50 % PEG 200,0.2 M Magnesium chloride hexahydrate, 0.1 M Sodium cacodylate
Crystal Properties Matthews coefficient Solvent content 2.17 43.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.92 α = 90 b = 139.12 β = 90 c = 167.57 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9200 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 69.56 99.9 0.135 0.997 10 6.3 99985
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 99.6 2.27 0.292 0.8 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2EIY 2.1 66.86 95105 4801 99.78 0.1829 0.18111 0.1812 0.21797 0.2179 RANDOM 45.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.01 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.984 r_dihedral_angle_4_deg 23.047 r_dihedral_angle_3_deg 18.911 r_long_range_B_refined 13.551 r_scbond_it 9.8 r_mcangle_it 7.353 r_mcbond_it 5.856 r_dihedral_angle_1_deg 5.16 r_angle_refined_deg 1.781 r_chiral_restr 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.984 r_dihedral_angle_4_deg 23.047 r_dihedral_angle_3_deg 18.911 r_long_range_B_refined 13.551 r_scbond_it 9.8 r_mcangle_it 7.353 r_mcbond_it 5.856 r_dihedral_angle_1_deg 5.16 r_angle_refined_deg 1.781 r_chiral_restr 0.117 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13641 Nucleic Acid Atoms Solvent Atoms 668 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement BUSTER-TNT refinement XDS data reduction XSCALE data scaling Aimless data scaling xia2 data reduction MOLREP phasing