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Crystal structure of mouse prorenin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AMT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 0.75 K/Na H2PO4, 0.1M HEPES PH 7.9
Crystal Properties Matthews coefficient Solvent content 4.92 75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.232 α = 90 b = 141.232 β = 90 c = 82.961 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50.25 99.9 0.088 0.998 9.5 5.2 13590 71150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.42 100 0.739 0.827 1.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4AMT 3.2 50.21 12878 703 99.9 0.26499 0.26308 0.266 0.29723 0.2939 RANDOM 126.261
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.25 -9.25 18.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.356 r_dihedral_angle_3_deg 12.596 r_dihedral_angle_4_deg 8.865 r_dihedral_angle_1_deg 5.677 r_long_range_B_refined 5.182 r_long_range_B_other 5.181 r_mcangle_it 3.729 r_mcangle_other 3.728 r_scangle_other 2.679 r_mcbond_it 2.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.356 r_dihedral_angle_3_deg 12.596 r_dihedral_angle_4_deg 8.865 r_dihedral_angle_1_deg 5.677 r_long_range_B_refined 5.182 r_long_range_B_other 5.181 r_mcangle_it 3.729 r_mcangle_other 3.728 r_scangle_other 2.679 r_mcbond_it 2.064 r_mcbond_other 2.063 r_scbond_it 1.417 r_scbond_other 1.417 r_angle_refined_deg 1.012 r_angle_other_deg 0.824 r_chiral_restr 0.055 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2435 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing