☰ Navigation Tabs
CCT068127 in complex with CDK2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 10mg/ml CDK2
10% V/V PEG3350, 50 mM HEPES/NAOH, 50 mM NA/K PHOSPHATE, pH 7.5.
Crystal Properties Matthews coefficient Solvent content 1.91 35.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.66 α = 90 b = 71.15 β = 90 c = 71.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS 6M 2016-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.978 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 71.15 100 0.124 0.98 3.2 7.1 66489
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 99.9 0.29 0.4 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.3 50.36 63074 3341 99.97 0.19028 0.1885 0.1883 0.22597 0.2257 RANDOM 24.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.82 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.387 r_dihedral_angle_4_deg 15.111 r_dihedral_angle_3_deg 14.077 r_long_range_B_refined 7.235 r_long_range_B_other 7.233 r_dihedral_angle_1_deg 5.55 r_scangle_other 5.014 r_scbond_it 3.273 r_mcangle_it 3.272 r_mcangle_other 3.271
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.387 r_dihedral_angle_4_deg 15.111 r_dihedral_angle_3_deg 14.077 r_long_range_B_refined 7.235 r_long_range_B_other 7.233 r_dihedral_angle_1_deg 5.55 r_scangle_other 5.014 r_scbond_it 3.273 r_mcangle_it 3.272 r_mcangle_other 3.271 r_scbond_other 3.271 r_mcbond_it 2.178 r_mcbond_other 2.143 r_angle_refined_deg 1.961 r_angle_other_deg 1.057 r_chiral_restr 0.13 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2364 Nucleic Acid Atoms Solvent Atoms 343 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing