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Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.35M sodium thiocyanate and 20.9% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.62 53.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.223 α = 90 b = 137.652 β = 90 c = 320.513 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 80.12 98 7 6.7 39708 65.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 2.96 98 1.75 0.35 1.3 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3 39.58 35724 1843 98.2 0.2428 0.2416 0.2406 0.2653 0.2604 RANDOM 97.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.32 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.86 r_dihedral_angle_3_deg 20.499 r_dihedral_angle_4_deg 14.555 r_long_range_B_refined 9.189 r_long_range_B_other 9.178 r_dihedral_angle_1_deg 7.926 r_mcangle_it 3.628 r_mcangle_other 3.628 r_scangle_other 2.84 r_mcbond_it 2.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.86 r_dihedral_angle_3_deg 20.499 r_dihedral_angle_4_deg 14.555 r_long_range_B_refined 9.189 r_long_range_B_other 9.178 r_dihedral_angle_1_deg 7.926 r_mcangle_it 3.628 r_mcangle_other 3.628 r_scangle_other 2.84 r_mcbond_it 2.033 r_mcbond_other 2.033 r_angle_refined_deg 1.649 r_scbond_it 1.551 r_scbond_other 1.551 r_angle_other_deg 1.287 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9596 Nucleic Acid Atoms 1624 Solvent Atoms 130 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing