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Human Leukocyte Antigen A02 presenting ILAKFLHEL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4I4W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M ammonium sulphate, 0.1M MES pH7, 25% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.58 52.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.97 α = 90 b = 170.28 β = 90 c = 45.71 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 34.06 99.9 0.108 0.044 0.997 10.8 7.1 76630
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.93 100 0.666 0.913 3.2 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4I4W 1.88 34.06 72747 3797 99.84 0.1863 0.1844 0.193 0.2243 0.2299 RANDOM 33.021
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.07 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.431 r_dihedral_angle_4_deg 20.747 r_dihedral_angle_3_deg 16.113 r_dihedral_angle_1_deg 6.556 r_mcangle_it 2.28 r_angle_refined_deg 1.967 r_mcbond_it 1.557 r_mcbond_other 1.553 r_angle_other_deg 1.21 r_chiral_restr 0.154
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.431 r_dihedral_angle_4_deg 20.747 r_dihedral_angle_3_deg 16.113 r_dihedral_angle_1_deg 6.556 r_mcangle_it 2.28 r_angle_refined_deg 1.967 r_mcbond_it 1.557 r_mcbond_other 1.553 r_angle_other_deg 1.21 r_chiral_restr 0.154 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6336 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 198
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction