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A potent fluorescent inhibitor of glycogen phosphorylase as a catalytic site probe.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 6.8 289 N,N-bis(2-hydroxyethyl)-2-aminoethanesulfonic acid, EDTA, DTT, IMP
Crystal Properties Matthews coefficient Solvent content 2.5 50.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.363 α = 90 b = 128.363 β = 90 c = 116.512 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M 2013-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 1.23953 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 86.3 98.9 0.049 20.6 6.6 92031 29.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.88 97.7 0.527 4.1 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.78 86.27 87350 4639 98.64 0.17249 0.17126 0.1772 0.19518 0.2007 RANDOM 36.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.297 r_dihedral_angle_4_deg 16.163 r_dihedral_angle_3_deg 11.945 r_dihedral_angle_1_deg 5.216 r_long_range_B_refined 4.39 r_long_range_B_other 4.327 r_scangle_other 2.588 r_mcangle_it 1.995 r_mcangle_other 1.995 r_scbond_it 1.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.297 r_dihedral_angle_4_deg 16.163 r_dihedral_angle_3_deg 11.945 r_dihedral_angle_1_deg 5.216 r_long_range_B_refined 4.39 r_long_range_B_other 4.327 r_scangle_other 2.588 r_mcangle_it 1.995 r_mcangle_other 1.995 r_scbond_it 1.543 r_scbond_other 1.543 r_mcbond_it 1.198 r_mcbond_other 1.198 r_angle_refined_deg 0.968 r_angle_other_deg 0.707 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6562 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing