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Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi (crystal form I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 30% (w/v) PEG 400,
0.05 M NaCl,
0.1 M sodium citrate pH 5.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.884 α = 90 b = 123.379 β = 117.89 c = 147.026 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979490 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 64.97 100 0.072 0.046 13.9 6.8 336423
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 100 0.854 0.543 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 129.94 333266 3124 99.95 0.16726 0.16708 0.1669 0.1867 0.187 RANDOM 37.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.27 1.48 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.359 r_dihedral_angle_4_deg 19.062 r_dihedral_angle_3_deg 11.945 r_dihedral_angle_1_deg 9.294 r_long_range_B_refined 8.466 r_long_range_B_other 8.466 r_scangle_other 3.981 r_scbond_it 2.641 r_scbond_other 2.641 r_mcangle_it 2.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.359 r_dihedral_angle_4_deg 19.062 r_dihedral_angle_3_deg 11.945 r_dihedral_angle_1_deg 9.294 r_long_range_B_refined 8.466 r_long_range_B_other 8.466 r_scangle_other 3.981 r_scbond_it 2.641 r_scbond_other 2.641 r_mcangle_it 2.061 r_mcangle_other 2.06 r_angle_refined_deg 1.859 r_mcbond_it 1.453 r_mcbond_other 1.453 r_angle_other_deg 1.429 r_chiral_restr 0.128 r_bond_refined_d 0.021 r_gen_planes_refined 0.013 r_bond_other_d 0.01 r_gen_planes_other 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15990 Nucleic Acid Atoms Solvent Atoms 1796 Heterogen Atoms 259
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling AutoSol phasing