☰ Navigation Tabs
Human angiogenin ALS variant F100I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ANG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 0.2 M Na/K tartrate
0.1 M Na cacodylate
20% PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.97 37.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.878 α = 89.72 b = 34.781 β = 84.17 c = 52.92 γ = 84.34
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2012-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 52.7 95.1 0.989 6.5 2.4 37557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.47 80.1 0.937 3.9 2.3 1635
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ANG 1.44 52.65 35788 1768 95.09 0.17341 0.17232 0.1823 0.19544 0.1823 RANDOM 12.679
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.13 0.44 -0.13 -0.54 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.572 r_dihedral_angle_4_deg 14.335 r_dihedral_angle_3_deg 11.572 r_dihedral_angle_1_deg 7.019 r_long_range_B_refined 4.556 r_long_range_B_other 4.361 r_scangle_other 2.089 r_mcangle_it 1.685 r_mcangle_other 1.685 r_angle_refined_deg 1.621
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.572 r_dihedral_angle_4_deg 14.335 r_dihedral_angle_3_deg 11.572 r_dihedral_angle_1_deg 7.019 r_long_range_B_refined 4.556 r_long_range_B_other 4.361 r_scangle_other 2.089 r_mcangle_it 1.685 r_mcangle_other 1.685 r_angle_refined_deg 1.621 r_scbond_it 1.295 r_scbond_other 1.295 r_angle_other_deg 1.019 r_mcbond_it 1.008 r_mcbond_other 1.005 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1942 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing