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Human angiogenin ALS variant T80S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ANG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 289 0.2 M ammonium sulphate
0.1 M bis-tris propane
25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.3 46.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.425 α = 90 b = 37.335 β = 90 c = 42.76 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9793 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 42.8 95.7 0.984 9 6.4 12236
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 77.9 0.65 3.1 596
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ANG 1.8 42.76 11168 915 94.47 0.24195 0.23846 0.2445 0.28522 0.2902 RANDOM 21.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.37 -1.38 2.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.28 r_dihedral_angle_4_deg 20.366 r_dihedral_angle_3_deg 15.372 r_dihedral_angle_1_deg 6.791 r_long_range_B_refined 5.614 r_long_range_B_other 5.41 r_scangle_other 3.091 r_mcangle_it 2.368 r_mcangle_other 2.367 r_scbond_it 1.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.28 r_dihedral_angle_4_deg 20.366 r_dihedral_angle_3_deg 15.372 r_dihedral_angle_1_deg 6.791 r_long_range_B_refined 5.614 r_long_range_B_other 5.41 r_scangle_other 3.091 r_mcangle_it 2.368 r_mcangle_other 2.367 r_scbond_it 1.884 r_scbond_other 1.848 r_angle_refined_deg 1.458 r_mcbond_it 1.437 r_mcbond_other 1.431 r_angle_other_deg 0.96 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 964 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing