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Human angiogenin ALS variant K40R
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ANG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 289 0.4 M Na/K tartrate
0.1 M Na citrate
20 % PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.13 60.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.837 α = 90 b = 116.074 β = 90 c = 37.355 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 58 95.4 0.998 15 6.4 11150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.11 69.6 0.887 2.5 2.8 616
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ANG 2.05 58 10009 1131 94.99 0.18909 0.18455 0.1924 0.23057 0.2363 RANDOM 37.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.2 5.74 -3.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.86 r_dihedral_angle_3_deg 15.769 r_dihedral_angle_4_deg 14.787 r_long_range_B_refined 7.603 r_long_range_B_other 7.589 r_dihedral_angle_1_deg 6.645 r_scangle_other 4.717 r_mcangle_other 3.823 r_mcangle_it 3.82 r_scbond_it 2.875
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.86 r_dihedral_angle_3_deg 15.769 r_dihedral_angle_4_deg 14.787 r_long_range_B_refined 7.603 r_long_range_B_other 7.589 r_dihedral_angle_1_deg 6.645 r_scangle_other 4.717 r_mcangle_other 3.823 r_mcangle_it 3.82 r_scbond_it 2.875 r_scbond_other 2.855 r_mcbond_it 2.348 r_mcbond_other 2.322 r_angle_refined_deg 1.414 r_angle_other_deg 0.943 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 970 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing