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Structure of the Mal3 EB1-like domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.2 M NaCl, 30% MPD and 0.1 M sodium acetate at pH4.6
Crystal Properties Matthews coefficient Solvent content 2.1 41.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.38 α = 90 b = 37.91 β = 90 c = 101.64 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS 6M-F 2016-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 35.52 100 0.0925 16.19 12.5 32150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.378 99 1.963 0.571 1.15 10.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.33 35.52 32150 1570 99.61 0.195 0.1942 0.2041 0.2118 0.2232 RANDOM 22.3733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 1.72 -1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.41 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 12.771 r_dihedral_angle_1_deg 4.439 r_mcangle_it 3.869 r_angle_other_deg 3.698 r_mcbond_it 2.718 r_mcbond_other 2.571 r_angle_refined_deg 2.519 r_chiral_restr 0.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.41 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 12.771 r_dihedral_angle_1_deg 4.439 r_mcangle_it 3.869 r_angle_other_deg 3.698 r_mcbond_it 2.718 r_mcbond_other 2.571 r_angle_refined_deg 2.519 r_chiral_restr 0.158 r_bond_refined_d 0.032 r_gen_planes_other 0.024 r_gen_planes_refined 0.012 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1106 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms
Software Software Software Name Purpose PDB_EXTRACT data extraction REFMAC refinement xia2 data reduction Aimless data scaling Arcimboldo phasing