☰ Navigation Tabs
Novel Imidazo[1,2-a]pyridine Derivatives with Potent Autotaxin/ENPP2 Inhibitor Activity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG3350 25%, 0.2M thiocyanate, 0.1M ammonium iodide
Crystal Properties Matthews coefficient Solvent content 2.4 48.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.45 α = 90 b = 78.89 β = 91.87 c = 78.57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.98011 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 78.89 93.5 0.164 0.879 10.7 2.7 26178
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 95.6 0.626 0.396 2.7 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 78.53 23047 1278 92.92 0.23193 0.22896 0.2334 0.28426 0.287 RANDOM 25.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.11 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.91 r_dihedral_angle_4_deg 17.239 r_dihedral_angle_3_deg 15.757 r_dihedral_angle_1_deg 6.699 r_long_range_B_refined 4.615 r_long_range_B_other 4.615 r_mcangle_it 2.55 r_mcangle_other 2.549 r_scangle_other 2.344 r_angle_refined_deg 1.526
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.91 r_dihedral_angle_4_deg 17.239 r_dihedral_angle_3_deg 15.757 r_dihedral_angle_1_deg 6.699 r_long_range_B_refined 4.615 r_long_range_B_other 4.615 r_mcangle_it 2.55 r_mcangle_other 2.549 r_scangle_other 2.344 r_angle_refined_deg 1.526 r_mcbond_it 1.487 r_mcbond_other 1.485 r_scbond_it 1.471 r_scbond_other 1.463 r_angle_other_deg 0.95 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5811 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing