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Blood group synthase AAGlyB in complex with UDP-Gal and cryoprotected with glycerol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 MOPS buffer, manganese chloride, ammonium sulfate, PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.25 45.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.643 α = 90 b = 148.796 β = 90 c = 79.782 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.0723 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 42.14 99.1 0.088 10.4 3.5 96982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 99.3 0.522 2.1 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.2 40 92055 4900 98.98 0.13163 0.13033 0.1305 0.15654 0.1562 RANDOM 12.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 0.49 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.336 r_dihedral_angle_4_deg 18.859 r_dihedral_angle_3_deg 12.461 r_sphericity_bonded 7.298 r_dihedral_angle_1_deg 6.648 r_rigid_bond_restr 4.942 r_sphericity_free 4.072 r_long_range_B_refined 2.554 r_long_range_B_other 2.042 r_scangle_other 2.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.336 r_dihedral_angle_4_deg 18.859 r_dihedral_angle_3_deg 12.461 r_sphericity_bonded 7.298 r_dihedral_angle_1_deg 6.648 r_rigid_bond_restr 4.942 r_sphericity_free 4.072 r_long_range_B_refined 2.554 r_long_range_B_other 2.042 r_scangle_other 2.025 r_scbond_it 1.887 r_scbond_other 1.824 r_angle_refined_deg 1.671 r_mcangle_other 1.524 r_mcangle_it 1.521 r_mcbond_it 1.188 r_mcbond_other 1.172 r_angle_other_deg 0.987 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2427 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing