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Cyclohexanone Monooxygenase from T. municipale: reduced enzyme bound to NADP+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5M10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293.15 100 mM Tris-HCl, 25 % PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.57 52.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.206 α = 90 b = 114.677 β = 90 c = 155.435 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273.15 CCD RAYONIX MX-225 2016-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.96863 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 33.78 94 0.064 0.996 12.23 1.9 76543 10.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 97 0.434 0.664 1.81 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5M10 1.6 33.78 76541 2340 93.77 0.14877 0.14785 0.1483 0.17736 0.1778 RANDOM 12.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.1 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.113 r_dihedral_angle_4_deg 16.832 r_dihedral_angle_3_deg 12.323 r_long_range_B_refined 6.63 r_dihedral_angle_1_deg 6.524 r_long_range_B_other 5.92 r_scangle_other 3.543 r_scbond_it 2.321 r_scbond_other 2.321 r_angle_refined_deg 1.986
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.113 r_dihedral_angle_4_deg 16.832 r_dihedral_angle_3_deg 12.323 r_long_range_B_refined 6.63 r_dihedral_angle_1_deg 6.524 r_long_range_B_other 5.92 r_scangle_other 3.543 r_scbond_it 2.321 r_scbond_other 2.321 r_angle_refined_deg 1.986 r_mcangle_other 1.54 r_mcangle_it 1.539 r_angle_other_deg 1.113 r_mcbond_it 1.035 r_mcbond_other 1.011 r_chiral_restr 0.127 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4154 Nucleic Acid Atoms Solvent Atoms 807 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing