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Re-refined structure of the bacteriophage T4 short tail fibre PDB entry 1H6W containing 71 additionally identified residues
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 15-25 % (V/V) 2-METHYLPROPANE-2-OL
(TERTIARY BUTANOL), 100 MM SODIUM CITRATE PH 5.6
10% (V/V) GLYCEROL, 10 MM HEPES, 150 MM SODIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.257 α = 90 b = 51.257 β = 90 c = 249.491 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 19.8 92.3 0.057 8.5 7.3 28682 16.12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 68.7 0.154 4.8 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.9 19.8 27229 1452 91.52 0.18473 0.18317 0.1927 0.21465 0.2188 RANDOM 37.983
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.08 0.17 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.537 r_dihedral_angle_4_deg 14.032 r_dihedral_angle_3_deg 13.033 r_dihedral_angle_1_deg 7.91 r_long_range_B_refined 6.863 r_long_range_B_other 6.578 r_scangle_other 4.316 r_mcangle_it 4.211 r_mcangle_other 4.21 r_mcbond_it 2.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.537 r_dihedral_angle_4_deg 14.032 r_dihedral_angle_3_deg 13.033 r_dihedral_angle_1_deg 7.91 r_long_range_B_refined 6.863 r_long_range_B_other 6.578 r_scangle_other 4.316 r_mcangle_it 4.211 r_mcangle_other 4.21 r_mcbond_it 2.785 r_mcbond_other 2.785 r_scbond_it 2.701 r_scbond_other 2.69 r_angle_refined_deg 1.603 r_angle_other_deg 1 r_chiral_restr 0.104 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1734 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 7
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement