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Discovery of phenoxyindazoles and phenylthioindazoles as RORg inverse agonists
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B0W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 278 0.1M Hepes pH8.5, 0.1M MgCl2, 7% PEG6000
Crystal Properties Matthews coefficient Solvent content 3.49 64.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.81 α = 90 b = 173.81 β = 90 c = 68.4 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 278 PIXEL DECTRIS PILATUS 6M Kirkpatrick-Baez pair of bi-morph mirrors plus channel cut cryogenically cooled monochromator crystal 2014-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.313 99.7 0.057 0.999 21.98 7.07 15503 -3 55.298
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.54 99.1 0.509 0.923 3.98 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3B0W 2.4 29.31 14726 776 99.75 0.2028 0.2001 0.2002 0.2533 0.2532 RANDOM 52.239
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 -0.58 -1.16 3.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.146 r_dihedral_angle_4_deg 19.915 r_dihedral_angle_3_deg 18.366 r_scbond_it 6.716 r_mcangle_it 6.528 r_dihedral_angle_1_deg 6.168 r_mcbond_it 4.736 r_angle_refined_deg 1.992 r_chiral_restr 0.139 r_bond_refined_d 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.146 r_dihedral_angle_4_deg 19.915 r_dihedral_angle_3_deg 18.366 r_scbond_it 6.716 r_mcangle_it 6.528 r_dihedral_angle_1_deg 6.168 r_mcbond_it 4.736 r_angle_refined_deg 1.992 r_chiral_restr 0.139 r_bond_refined_d 0.018 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1984 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 35
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction