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Israeli acute paralysis virus heated to 63 degree - full particle
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.299 r_dihedral_angle_3_deg 10.211 r_long_range_B_refined 9.705 r_long_range_B_other 9.705 r_dihedral_angle_4_deg 8.062 r_dihedral_angle_1_deg 7.454 r_mcangle_it 4.188 r_mcangle_other 4.188 r_scangle_other 3.411 r_mcbond_it 2.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.299 r_dihedral_angle_3_deg 10.211 r_long_range_B_refined 9.705 r_long_range_B_other 9.705 r_dihedral_angle_4_deg 8.062 r_dihedral_angle_1_deg 7.454 r_mcangle_it 4.188 r_mcangle_other 4.188 r_scangle_other 3.411 r_mcbond_it 2.274 r_mcbond_other 2.273 r_scbond_it 1.803 r_scbond_other 1.803 r_angle_refined_deg 1.275 r_angle_other_deg 0.999 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Israeli acute paralysis virus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 9614 Reported Resolution (Å) 3.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details initial rigid body fit was done by Chimera, then the model was refined using realspace refinement in Phenix and finaly reciprocal refined in REFMAC.
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 21
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 75000 Calibrated Magnification 75000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN 2.11 IMAGE ACQUISITION EPU 2 CTF CORRECTION CTFFIND 4 CTF CORRECTION RELION MODEL FITTING UCSF Chimera 1.11 INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT RELION 1.4 CLASSIFICATION RELION 1.4 RECONSTRUCTION RELION 1.4 MODEL REFINEMENT PHENIX 1.10.1 MODEL REFINEMENT REFMAC 5.8.0155
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION