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Crystal structure of human PCAF bromodomain in complex with compound-E (CPD-E)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 21-35% PEG 3350, 0.1 M Bis-Tris pH 5.5-7.0 or 21-40% medium-molecular-weight PEG smears (MMW PEG smears) buffered either with 0.1 M Bis-Tris pH 6.0-7.5 or 0.1 M Tris pH 7.5-8.8
Crystal Properties Matthews coefficient Solvent content 3.38 63.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.659 α = 90 b = 99.659 β = 90 c = 100.354 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2013-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.91997 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 49.83 100 0.06 12 4.6 23298 51.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.16 100 0.668 2.1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.05 49.83 22096 1198 99.94 0.17598 0.17452 0.1808 0.20393 0.212 RANDOM 63.492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.14 -0.28 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.745 r_dihedral_angle_4_deg 19.554 r_dihedral_angle_3_deg 14.709 r_long_range_B_refined 9.927 r_long_range_B_other 9.925 r_scangle_other 7.291 r_dihedral_angle_1_deg 5.781 r_scbond_it 4.939 r_scbond_other 4.937 r_mcangle_it 4.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.745 r_dihedral_angle_4_deg 19.554 r_dihedral_angle_3_deg 14.709 r_long_range_B_refined 9.927 r_long_range_B_other 9.925 r_scangle_other 7.291 r_dihedral_angle_1_deg 5.781 r_scbond_it 4.939 r_scbond_other 4.937 r_mcangle_it 4.791 r_mcangle_other 4.789 r_mcbond_it 3.453 r_mcbond_other 3.451 r_angle_refined_deg 1.646 r_angle_other_deg 1.203 r_chiral_restr 0.095 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1802 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing