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Hen Egg White Lysozyme co-crystallized with [H2Ind][trans-RuCl4(DMSO)(HInd)]
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H87
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 0.8 M NaCl, 50 mM sodium acetate
Crystal Properties Matthews coefficient Solvent content 1.95 37.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.609 α = 90 b = 77.609 β = 90 c = 37.205 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD AGILENT ATLAS CCD 2015-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 15.22 99.8 0.131 0.996 9.9 5.9 18789
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.52 97.2 0.25 0.228 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H87 1.6 14.83 14709 790 99.79 0.1731 0.171 0.184 0.2138 0.2227 RANDOM 18.409
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.877 r_dihedral_angle_3_deg 14.509 r_dihedral_angle_4_deg 13.158 r_dihedral_angle_1_deg 6.222 r_mcangle_it 2.393 r_angle_refined_deg 1.828 r_mcbond_it 1.646 r_mcbond_other 1.592 r_angle_other_deg 1.005 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.877 r_dihedral_angle_3_deg 14.509 r_dihedral_angle_4_deg 13.158 r_dihedral_angle_1_deg 6.222 r_mcangle_it 2.393 r_angle_refined_deg 1.828 r_mcbond_it 1.646 r_mcbond_other 1.592 r_angle_other_deg 1.005 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 32
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrysalisPro data reduction PHASER phasing