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Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD 90% H2O/10% D2O 100 mM 6.8 760 mmHg 293 Bruker AVANCE III 950 2 3D 1H-13C NOESY 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD 90% H2O/10% D2O 100 mM 6.8 760 mmHg 293 Bruker AVANCE III 950 3 3D 1H-13C NOESY aromatic 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD 90% H2O/10% D2O 100 mM 6.8 760 mmHg 293 Bruker AVANCE III 700 4 4D HCCH TOCSY 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD 90% H2O/10% D2O 100 mM 6.8 760 mmHg 293 Bruker AVANCE III 700 5 3D HNCA 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD 90% H2O/10% D2O 100 mM 6.8 760 mmHg 293 Bruker AVANCE III 700 6 F1-13C/15N-filtered NOESY-[13C,1H]-HSQC 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD 90% H2O/10% D2O 100 mM 6.8 760 mmHg 293 Bruker AVANCE III 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 950 3 Bruker AVANCE III 700
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky Goddard 2 structure calculation CYANA 3.97 Guntert, Mumenthaler and Wuthrich 3 collection TopSpin Bruker Biospin 4 peak picking Sparky Goddard 5 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 6 processing TopSpin Bruker Biospin