5LVF
Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD | 90% H2O/10% D2O | 100 mM | 6.8 | 760 mmHg | 293 | Bruker AVANCE III 950 |
2 | 3D 1H-13C NOESY | 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD | 90% H2O/10% D2O | 100 mM | 6.8 | 760 mmHg | 293 | Bruker AVANCE III 950 |
3 | 3D 1H-13C NOESY aromatic | 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD | 90% H2O/10% D2O | 100 mM | 6.8 | 760 mmHg | 293 | Bruker AVANCE III 700 |
4 | 4D HCCH TOCSY | 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD | 90% H2O/10% D2O | 100 mM | 6.8 | 760 mmHg | 293 | Bruker AVANCE III 700 |
5 | 3D HNCA | 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD | 90% H2O/10% D2O | 100 mM | 6.8 | 760 mmHg | 293 | Bruker AVANCE III 700 |
6 | F1-13C/15N-filtered NOESY-[13C,1H]-HSQC | 1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD | 90% H2O/10% D2O | 100 mM | 6.8 | 760 mmHg | 293 | Bruker AVANCE III 950 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 950 |
3 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | structure calculation | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
3 | collection | TopSpin | Bruker Biospin | |
4 | peak picking | Sparky | Goddard | |
5 | refinement | Amber | 16 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
6 | processing | TopSpin | Bruker Biospin |