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N-terminal motif dimerization of EGFR transmembrane domain in bicellar environment
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY with heteronuclear filtration 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 2 2D 1H-13C HSQC 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 3 2D 1H-15N HSQC 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 4 3D HNCO 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 5 3D HNCA 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 6 3D HN(CO)CA 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 7 3D 1H-15N NOESY 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600 8 3D 1H-13C NOESY 0.01 % sodium azide, 50 mM phosphate buffer pH 5.8, 5 mM TCEP, 30 mM U-2H DHPC, 10 mM U-2H DMPC 90% H2O/10% D2O 50 mM 5.8 AMBIENT atm 313 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA 3.97 Guntert, Mumenthaler and Wuthrich 2 structure calculation CYANA 3.97 Guntert, Mumenthaler and Wuthrich 4 chemical shift assignment CARA Keller and Wuthrich 5 peak picking CARA Keller and Wuthrich