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CDK1/CyclinB1/CKS2 in complex with NU6102
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.7 277 0.1M MES/IMIDAZOLE BUFFER (PH6.7), 6.5% MPD, 5% PEG4K, 10% PEG1K PROTEIN AT 10-12 MG/ML
Crystal Properties Matthews coefficient Solvent content 2.39 48.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.04 α = 103.88 b = 67.75 β = 90.89 c = 85.06 γ = 90.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.989 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 65.7 97.3 0.092 6.2 2 84841
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.1 95.5 1.16 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4YC3 2.06 65.7 80705 4136 97.31 0.20037 0.19764 0.203 0.25385 0.2547 RANDOM 47.072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.34 -3.14 2.62 -0.1 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.254 r_dihedral_angle_4_deg 19.042 r_dihedral_angle_3_deg 18.353 r_dihedral_angle_1_deg 7.722 r_long_range_B_refined 4.593 r_long_range_B_other 4.586 r_angle_refined_deg 2.233 r_scangle_other 1.485 r_mcangle_it 1.4 r_mcangle_other 1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.254 r_dihedral_angle_4_deg 19.042 r_dihedral_angle_3_deg 18.353 r_dihedral_angle_1_deg 7.722 r_long_range_B_refined 4.593 r_long_range_B_other 4.586 r_angle_refined_deg 2.233 r_scangle_other 1.485 r_mcangle_it 1.4 r_mcangle_other 1.4 r_angle_other_deg 1.201 r_scbond_it 0.965 r_scbond_other 0.961 r_mcbond_it 0.838 r_mcbond_other 0.838 r_chiral_restr 0.136 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10174 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing