☰ Navigation Tabs
Complex structure of human IL2 mutant, Proleukin, with Fab fragment of NARA1 antibody
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3INK 3INK, 3TT1 experimental model PDB 3TT1 3INK, 3TT1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG3350
0.2M Sodium Nitrate
Crystal Properties Matthews coefficient Solvent content 2.51 50.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 201.757 α = 90 b = 36.233 β = 102.93 c = 88.707 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 58.74 84.8 0.066 0.079 14.2 3.2 39422
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 96 0.394 2.59 3.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3INK, 3TT1 1.95 58.74 37450 1972 84.86 0.19435 0.18914 0.1962 0.29083 0.2928 RANDOM 42.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.46 0.67 -0.35
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 81.658 r_sphericity_bonded 39.003 r_dihedral_angle_2_deg 37.328 r_dihedral_angle_4_deg 19.9 r_dihedral_angle_3_deg 18.272 r_long_range_B_refined 13.276 r_long_range_B_other 12.065 r_scangle_other 9.312 r_mcangle_it 9.128 r_mcangle_other 9.126
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 81.658 r_sphericity_bonded 39.003 r_dihedral_angle_2_deg 37.328 r_dihedral_angle_4_deg 19.9 r_dihedral_angle_3_deg 18.272 r_long_range_B_refined 13.276 r_long_range_B_other 12.065 r_scangle_other 9.312 r_mcangle_it 9.128 r_mcangle_other 9.126 r_scbond_it 8.295 r_scbond_other 8.267 r_dihedral_angle_1_deg 7.66 r_mcbond_it 7.638 r_mcbond_other 7.638 r_rigid_bond_restr 4.011 r_angle_refined_deg 2.084 r_angle_other_deg 1.162 r_chiral_restr 0.133 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4329 Nucleic Acid Atoms Solvent Atoms 494 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing