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Structure of the TOG domain of human Cep104
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 0.1 M MES pH 6.0
11 % PEG 20K
Crystal Properties Matthews coefficient Solvent content 3.38 63.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.288 α = 90 b = 53.445 β = 91.87 c = 155.356 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.94 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 49.5 99.7 0.13 0.997 10.2 6.9 40229
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 99.6 0.667 1.8 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 49.5 38190 2031 98.6 0.23525 0.23426 0.25341 0.2345 RANDOM 51.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.9 1.35 -2.58 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_4_deg 15.681 r_dihedral_angle_3_deg 13.907 r_long_range_B_refined 5.697 r_long_range_B_other 5.675 r_dihedral_angle_1_deg 5.194 r_scangle_other 3.814 r_mcangle_it 3.281 r_mcangle_other 3.28 r_scbond_it 2.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_4_deg 15.681 r_dihedral_angle_3_deg 13.907 r_long_range_B_refined 5.697 r_long_range_B_other 5.675 r_dihedral_angle_1_deg 5.194 r_scangle_other 3.814 r_mcangle_it 3.281 r_mcangle_other 3.28 r_scbond_it 2.278 r_scbond_other 2.278 r_mcbond_it 1.924 r_mcbond_other 1.924 r_angle_refined_deg 1.282 r_angle_other_deg 1.103 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4104 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELXDE phasing