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Crystal structure of 3-Ketoacyl-CoA Thiolase (MmgA) from Bacillus subtilis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M sodium iodide, 0.1 M BTP pH 8.5, 20 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.55 51.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.18 α = 90 b = 141.12 β = 89.98 c = 211.462 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.975 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 33.91 99 0.097 10.4 3.1 497070 161184
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 0.41
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 31.92 153197 8412 98.28 0.15282 0.15011 0.1693 0.20461 0.1734 RANDOM 21.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.53 1.32 1.48 -4.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.704 r_dihedral_angle_4_deg 19.093 r_dihedral_angle_3_deg 17.586 r_dihedral_angle_1_deg 8.264 r_long_range_B_refined 5.015 r_long_range_B_other 5.015 r_scangle_other 2.986 r_mcangle_it 2.66 r_mcangle_other 2.66 r_angle_refined_deg 2.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.704 r_dihedral_angle_4_deg 19.093 r_dihedral_angle_3_deg 17.586 r_dihedral_angle_1_deg 8.264 r_long_range_B_refined 5.015 r_long_range_B_other 5.015 r_scangle_other 2.986 r_mcangle_it 2.66 r_mcangle_other 2.66 r_angle_refined_deg 2.293 r_scbond_it 2.014 r_scbond_other 2.014 r_mcbond_it 1.77 r_mcbond_other 1.769 r_angle_other_deg 1.224 r_chiral_restr 0.169 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21815 Nucleic Acid Atoms Solvent Atoms 878 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing