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Structure of full length Cody from Bacillus subtilis in complex with Ile
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B18 2B18, 2B0L experimental model PDB 2B0L 2B18, 2B0L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 15% PEG5000, 0.1M HEPES pH 7.5, 5% tacsimate, 20mM Ile
Crystal Properties Matthews coefficient Solvent content 2.53 51.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.69 α = 90 b = 158.877 β = 90 c = 55.412 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 0.98000 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 92.5 0.065 25.3 5 22830
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 47.3 0.654 0.96 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2B18, 2B0L 3 45.45 21606 1164 92.44 0.21693 0.21225 0.30162 0.2778 RANDOM 110.383
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 2.04 -1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.218 r_long_range_B_other 20.482 r_long_range_B_refined 20.481 r_dihedral_angle_3_deg 19.774 r_dihedral_angle_4_deg 17.254 r_scangle_other 15.89 r_mcangle_it 13.526 r_mcangle_other 13.525 r_scbond_it 10.933 r_scbond_other 10.915
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.218 r_long_range_B_other 20.482 r_long_range_B_refined 20.481 r_dihedral_angle_3_deg 19.774 r_dihedral_angle_4_deg 17.254 r_scangle_other 15.89 r_mcangle_it 13.526 r_mcangle_other 13.525 r_scbond_it 10.933 r_scbond_other 10.915 r_mcbond_it 9.359 r_mcbond_other 9.342 r_dihedral_angle_1_deg 6.881 r_angle_refined_deg 1.647 r_angle_other_deg 1.078 r_chiral_restr 0.108 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8068 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing