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E. coli F9 pilus adhesin FmlH bound to the Thomsen-Friedenreich (TF) antigen
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M Citrate pH2, 2.2M ammonium
sulfate, 20% glycerol
Crystal Properties Matthews coefficient Solvent content 2.31 46.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.82 α = 90 b = 51.46 β = 90 c = 53.74 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2012-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97631 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 59.4 99.6 0.14 1 10.8 7 122486 17285 39.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 97.5 0.8 0.8 2.1 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 59.4 16407 877 99.94 0.18241 0.18014 0.1899 0.22446 0.2254 RANDOM 36.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.11 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.395 r_dihedral_angle_3_deg 13.886 r_dihedral_angle_1_deg 7.241 r_long_range_B_refined 6.352 r_long_range_B_other 6.326 r_scangle_other 4.536 r_mcangle_it 3.429 r_mcangle_other 3.428 r_scbond_it 2.896 r_scbond_other 2.896
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.395 r_dihedral_angle_3_deg 13.886 r_dihedral_angle_1_deg 7.241 r_long_range_B_refined 6.352 r_long_range_B_other 6.326 r_scangle_other 4.536 r_mcangle_it 3.429 r_mcangle_other 3.428 r_scbond_it 2.896 r_scbond_other 2.896 r_mcbond_it 2.195 r_mcbond_other 2.194 r_angle_refined_deg 2.022 r_dihedral_angle_4_deg 1.986 r_angle_other_deg 1.478 r_chiral_restr 0.122 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.008 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2412 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing