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Crystal structure of the lambda N-Nus factor complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L2F 1L2F, 2KWP, 1U9L, 3B3D, 1QFQ experimental model PDB 2KWP 1L2F, 2KWP, 1U9L, 3B3D, 1QFQ experimental model PDB 1U9L 1L2F, 2KWP, 1U9L, 3B3D, 1QFQ experimental model PDB 3B3D 1L2F, 2KWP, 1U9L, 3B3D, 1QFQ experimental model PDB 1QFQ 1L2F, 2KWP, 1U9L, 3B3D, 1QFQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.1M HEPES pH 7.5, 40%(v/v) ethylene glycol,
5% (w/v) PEG 3000
Crystal Properties Matthews coefficient Solvent content 3.57 65.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.776 α = 90 b = 101.803 β = 90 c = 279.918 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.35 50 99.3 0.15 11.56 7.3 40077
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.35 3.55 98.3 2.02 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1L2F, 2KWP, 1U9L, 3B3D, 1QFQ 3.35 39.52 1.35 39986 2000 99.38 0.2986 0.2966 0.2994 0.3354 0.3376
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.369 f_angle_d 0.845 f_chiral_restr 0.048 f_plane_restr 0.005 f_bond_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11642 Nucleic Acid Atoms 1193 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing