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Bovine beta-lactoglobulin complex with myristic acid at high pressure (0.55 GPa)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UEV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1.34 M CITRIC SODIUM, 0.1 M TRIS-HCL,
Crystal Properties Matthews coefficient Solvent content 2.43 49.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.757 α = 90 b = 52.757 β = 90 c = 110.446 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD AGILENT ATLAS CCD 2012-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 0.7107
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 7.36 91 0.48 0.0858 0.167 0.966 7.6 23.1 5846
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 93.3 0.6174 0.6302 1.214 0.381 24.8 954
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UEV 2.5 7.36 5045 800 89.01 0.275 0.2557 0.2618 0.3975 0.3995 RANDOM 32.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.566 r_dihedral_angle_4_deg 20.295 r_dihedral_angle_3_deg 20.109 r_dihedral_angle_1_deg 7.907 r_mcangle_it 3.594 r_mcbond_it 2.067 r_mcbond_other 2.066 r_angle_refined_deg 1.554 r_angle_other_deg 0.844 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.566 r_dihedral_angle_4_deg 20.295 r_dihedral_angle_3_deg 20.109 r_dihedral_angle_1_deg 7.907 r_mcangle_it 3.594 r_mcbond_it 2.067 r_mcbond_other 2.066 r_angle_refined_deg 1.554 r_angle_other_deg 0.844 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1280 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing PDB_EXTRACT data extraction CrysalisPro data reduction