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E20K/I59A/E72K/I92A/D126K/A142V FLAVODOXIN FROM ANABAENA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FLV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291.15 PEG 4000 26 % and TRIS/HCl 0,1 M, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.05 40.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.919 α = 90 b = 62.911 β = 90 c = 64.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB mirrors 2016-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979100 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 64.65 99 0.047 0.999 18.1 7.5 62821
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.16 97.4 0.431 0.933 4.6 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1flv 1.1 45.09 59664 3088 98.81 0.1609 0.16011 0.165 0.17605 0.1814 RANDOM 13.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.74 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.142 r_dihedral_angle_4_deg 21.966 r_dihedral_angle_3_deg 11.739 r_dihedral_angle_1_deg 6.212 r_long_range_B_refined 4.681 r_long_range_B_other 4.603 r_scangle_other 3.243 r_scbond_other 2.174 r_scbond_it 2.173 r_mcangle_other 1.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.142 r_dihedral_angle_4_deg 21.966 r_dihedral_angle_3_deg 11.739 r_dihedral_angle_1_deg 6.212 r_long_range_B_refined 4.681 r_long_range_B_other 4.603 r_scangle_other 3.243 r_scbond_other 2.174 r_scbond_it 2.173 r_mcangle_other 1.887 r_mcangle_it 1.886 r_angle_refined_deg 1.699 r_mcbond_it 1.242 r_mcbond_other 1.226 r_angle_other_deg 0.993 r_chiral_restr 0.109 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1323 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling MOLREP phasing