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Streptococcus pneumonia TIGR4 flavodoxin: structural and biophysical characterization of a novel drug target
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 292 100mM Bis-Tris pH 5.5 and 200 mM calcium chloride, 10% glycerol,2 M ammonium sulphate.
Crystal Properties Matthews coefficient Solvent content 2.11 41.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.676 α = 90 b = 101.676 β = 90 c = 68.285 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2013-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 37 99.2 0.094 18.9 16 15961
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.07 37 15160 801 99.22 0.18948 0.18736 0.1998 0.22871 0.2335 RANDOM 38.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.71 0.71 -2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.861 r_dihedral_angle_3_deg 21.183 r_dihedral_angle_4_deg 14.823 r_long_range_B_refined 7.678 r_long_range_B_other 7.657 r_dihedral_angle_1_deg 6.758 r_scangle_other 5.43 r_scbond_it 3.661 r_scbond_other 3.659 r_mcangle_it 3.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.861 r_dihedral_angle_3_deg 21.183 r_dihedral_angle_4_deg 14.823 r_long_range_B_refined 7.678 r_long_range_B_other 7.657 r_dihedral_angle_1_deg 6.758 r_scangle_other 5.43 r_scbond_it 3.661 r_scbond_other 3.659 r_mcangle_it 3.006 r_mcangle_other 3.005 r_angle_refined_deg 2.047 r_mcbond_other 2.033 r_mcbond_it 2.032 r_angle_other_deg 1.078 r_chiral_restr 0.143 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2218 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing